Please be aware that the page you are currently viewing is not for the latest available version!
This repository contains a collection of BioWDL workflows which can be used for aligning sequencing data. There are currently two workflows available:
- align-bwamem.wdl: Uses BWA mem to align DNA.
- align-star.wdl: Uses STAR to align RNA.
These workflows are part of BioWDL developed by the SASC team.
Dependency requirements and tool versions
Included in the repository is an environment.yml file. This file includes
all the tool version on which the workflow was tested. You can use conda and
this file to create an environment with all the correct tools.
Contact
For any questions about running these workflows and feature request (such as adding additional options), please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.